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Best Accounting Software Shopify Startups

A woman working on an ecommerce marketing strategy using a laptop in an office.

Are you running a startup and struggling to keep up with all your bookkeeping and accounting needs?

Accounting software is the solution, as it can help streamline business processes. It provides powerful features like invoicing, expense tracking, sales tax filing, and payroll processing. Furthermore, it integrates seamlessly with popular ecommerce tools like Shopify to help business owners gain insights and analytics and make well-informed decisions. Makes sure to research the options available and choose the best accounting software for your startup.

Accounting software is a must-have for entrepreneurs. It simplifies billing customers, streamlines tax procedures, and gives businesses detailed insights into their cash flow. It enables business owners to easily stay on top of their day-to-day transactions while providing them with financial analytics, such as income and expenses, profits, and tax filing. This can help business owners identify problems and opportunities and make strategic decisions for their success. Accounting software is an invaluable tool for entrepreneurs.

In this blog, Experlu has listed the best accounting software for startups.

What Is Accounting Software Is Right For You?

Accounting software is a computer tool that helps to record and report a company's financial activities.

Bookkeeping, which primarily involves managing historical financial data, can be a tedious task for startups with limited staff, as it diverts their attention away from more important matters such as daily operations and future growth. Employing accounting software can significantly streamline the bookkeeping process and provide business owners with valuable insights through accessible financial intelligence, trends, and data, enabling them to make informed decisions.

Accounting software is highly beneficial for startup owners with limited resources or personal time to invest in accurate bookkeeping and accounting practices. It serves as a virtual accountant for such organizations, assisting them in efficiently automating their bookkeeping procedures. Additionally, you may want to consider working with a company who offers Shopify accounting services.

Best Accounting Software Solutions For Startups


Quickbooks is a beautiful tool that allows you to transition to their software with quick importing of spreadsheets seamlessly. It has several plans from which you can select to meet the needs of your business, and each of these is easily affordable. 

Even the most “basic” plan is very effective and efficient. The tool allows you to monitor expenses and income, automatically chase late payments, send unlimited invoices, easily store receipts, connect several bank accounts for a clear picture of your business finances, and run multiple reports. 

Sage Business Cloud Accounting

This software is a user-friendly accounting solution for startup owners that helps manage all aspects of the business seamlessly, such as payroll, cash flow, and invoicing. With Sage Business Cloud Accounting, users can manage their accounting remotely.

You can connect your bank to the system and automatically update your account information, and it will provide you with an up-to-date view of your finances. Additionally, the system can assist businesses in forecasting and planning for future financial needs.


Kashflow is a fantastic software that assists businesses with all areas of accounting, including bookkeeping and payroll. It offers an HR tool that can be handy if your startup plans to hire staff, allowing you to keep operations streamlined in one platform.

It assists with invoicing, quoting, payment, and notifications and offers a complete view of your finances anytime, anywhere. It provides simple-to-understand reports, and you can link your bank accounts to the platform to track your cash flow.


Wave is one of the most widely used and free online accounting software.

The software is free for accounting, invoicing, and receipts; however, startup owners must pay for payroll and additional individual technical assistance. It provides various effective services, including limitless billing, contact management, personal accounting, report generation, and cost tracking.

Zoho Books

Zoho Books is a cloud-based tool that allows users to create invoices, manage expenses, and track products and services. It can be integrated with other apps from Zoho's suite and third-party software and is part of a more extensive collection of tools that includes Zoho Expense and Zoho Invoice.

Zoho Books is a tool that provides real-time data on cash flow through its ability to connect to your bank account. It starts at a monthly cost of £10, and a free trial is offered for users before making a purchase.


FreeAgent is a perfect tool for businesses just starting and those companies that are a little more established. This is because the software enables you to collaborate with chartered accountants for startups to work on your finances and even offers a broader picture of your startup's financial health.

The software helps with invoicing, payroll, banking, estimates and projects, and expenses, assisting you in combining all areas of your startup to help you make better business decisions.


QuickBooks is a robust accounting software that can help Shopify ecommerce brands track their finances. It enables business owners to easily keep up with their day-to-day transactions while providing them with financial insights and analytics, such as income and expenses, cash flow, sales, profits, tax filing, and more. It can help Shopify brands take control of their finances, identify problems and opportunities, and make strategic decisions. QuickBooks is a must-have for any Shopify business looking to succeed in its ecommerce journey.


Xero is a cloud-based accounting software that can help Shopify ecommerce brands gain insight into their financials. It can be used for bookkeeping, invoicing, tax filing, and payroll. Xero is easy to use, secure, and reliable and can integrate with popular ecommerce tools like Shopify to help business owners streamline their accounting processes. It also provides them with real-time financial data, analytics, and insights to help them make strategic business decisions and maximize their online sales. Xero is an ideal solution for Shopify businesses that need a robust and reliable accounting system to manage their finances.


OneUp is an accounting software designed to help Shopify ecommerce brands better manage their finances. It provides business owners powerful features, such as invoicing, expense tracking, sales tax filing, and payroll processing. Furthermore, it integrates seamlessly with Shopify to streamline the accounting processes. OneUp offers insights and analytics, such as profit and loss statements, cash flow monitoring, and tax reports. This can help business owners identify issues and opportunities and make well-informed decisions.

Final thoughts

When choosing accounting software for your Shopify business, it is essential to research to find the right one for your business needs. There are many great options, so look into the features they offer and ensure they suit your specific requirements. Whether you're a beginner or an experienced accountant, the software should be user-friendly and easy to use and help keep your books in perfect order.

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